U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    AT3G21530 DNAse I-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821707, updated on 7-Sep-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    AT3G21530
    Gene description
    DNAse I-like superfamily protein
    Primary source
    Araport:AT3G21530
    Locus tag
    AT3G21530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (7582740..7585856, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene histidine-containing phosphotransmitter 1 Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF679 domain membrane protein 1) Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene transmembrane protein, putative (DUF679 domain membrane protein 2)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001338538.1
    NM_001338539.1
    NM_001338540.1
    NM_113048.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNAse I-like superfamily protein
    NP_188790.2
    • DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT2G48030.1); Has 250 Blast hits to 250 proteins in 102 species: Archae - 0; Bacteria - 169; Metazoa - 0; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7582740..7585856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113048.4 → NP_188790.2  DNAse I-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188790.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCX4, A0A7G2ERP5, Q9LVF3
      Conserved Domains (1) summary
      cl00490
      Location:167 → 418
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. NM_001338538.1 → NP_001326571.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCX4, A0A7G2ERP5, Q9LVF3
      Conserved Domains (1) summary
      cl00490
      Location:167 → 418
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    3. NM_001338539.1 → NP_001326570.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCX4, A0A7G2ERP5, Q9LVF3
      Conserved Domains (1) summary
      cl00490
      Location:167 → 418
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    4. NM_001338540.1 → NP_001326572.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPP5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Tools